rs27079674 SNP Detail

Summary

• ID
  rs27079674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4564055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGCTCA GTTTTACTTG
  GGTGGTAAAC ATCCTGGGCC TGGAGAAAAC GGGGCTCACG GAATACTGGG AAATAATGGT
  CTTTGCGTGG GAAAGGTGGG TGCTGGAATA GAGCTGGGAC CTCAGTCTGG AGCAAAACCT
  AAAAAGCTGT GCTAAGCCTC CACATAGTAG ACAGAGGGGG TTACAAGCAA AATCAGCCAT
  Y
  CTCACAGGAA AAACAAGAAC CCTGCTTTAC TCTGGAGCAA AGCAAACTCA CATGCTAAGC
  ATATAAAAGG AAATGGAAGC CGCGTGAATA AAATAAATGC AAACTCCGGT ACACAGAGCT
  TTAGCCCCTG GTGACGGTCC CCAGACCGCT AAGTAACTTT CACTTTCATC CAGAAAAAGC
  CACCCGCTTC CTTGCTCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37324695	NES08831872	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27079674					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37324695	NES08831872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4564055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11157	CpG island 11157	296 bp proximal
Frmd4a	FERM domain containing 4A	within coordinates
Rr1275	regulatory region 1275	1369 bp downstream
Rr367095	regulatory region 367095	462 bp upstream
Rr551084	regulatory region 551084	1085 bp distal
Rr551085	regulatory region 551085	22 bp proximal
Tssr15962	transcription start site region 15962	358 bp upstream
Tssr15963	transcription start site region 15963	401 bp upstream
Tssr15964	transcription start site region 15964	457 bp upstream
Tssr15965	transcription start site region 15965	498 bp upstream
Tssr15966	transcription start site region 15966	515 bp upstream
Tssr15967	transcription start site region 15967	634 bp upstream
Tssr15968	transcription start site region 15968	669 bp upstream
Tssr15969	transcription start site region 15969	687 bp upstream
Tssr15970	transcription start site region 15970	806 bp upstream
Tssr15971	transcription start site region 15971	874 bp upstream
Tssr22384	transcription start site region 22384	427 bp downstream