rs27079678 SNP Detail

Summary

• ID
  rs27079678
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4562941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATACAGAT GGGGTCCTTA
  ACTCCCAACC CCTACTCCAT GCTACCAAGA CCAGGACCAG ATATATCACT TGTAGGGCCC
  ATGCCAAATA GATCAAAACA CATTGGAAAT TTCAAGATGG CAGCAGCAAG CGAATGACCC
  TCTTGAGCAA GGGGCACTTG AGTCACACAT CCATAAAGCC AGTCCTGTAC AGGGTCCACG
  W
  TGCTTTGTTA GAGTTGGTAC AGGGTAGGGT CTAAGAAGGA CATATCTTTC TTTGGGGAGA
  AGTGGTAAAT AATCCTTTAT ACTTGCTGTA AGATATCTAG CACACACATA ATCTAATTTA
  ATTCTTTAAG CTCCAAGTTA AGACGTGGGA GATTTTAGAG AAGAACTCTG GTGGTTGTGC
  AGTCACCCTC TCTCTTTTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37324699	NES08831867	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27079678					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37324699	NES08831867	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4562941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11157	CpG island 11157	1410 bp proximal
Frmd4a	FERM domain containing 4A	within coordinates
Rr1275	regulatory region 1275	255 bp downstream
Rr367095	regulatory region 367095	1576 bp upstream
Rr551083	regulatory region 551083	1215 bp distal
Rr551084	regulatory region 551084	within coordinates
Rr551085	regulatory region 551085	1136 bp proximal
Tssr15962	transcription start site region 15962	1472 bp upstream
Tssr15963	transcription start site region 15963	1515 bp upstream
Tssr15964	transcription start site region 15964	1571 bp upstream
Tssr15965	transcription start site region 15965	1612 bp upstream
Tssr15966	transcription start site region 15966	1629 bp upstream
Tssr15967	transcription start site region 15967	1748 bp upstream
Tssr15968	transcription start site region 15968	1783 bp upstream
Tssr15969	transcription start site region 15969	1801 bp upstream
Tssr15970	transcription start site region 15970	1920 bp upstream
Tssr15971	transcription start site region 15971	1988 bp upstream
Tssr22384	transcription start site region 22384	1541 bp downstream