rs27079679 SNP Detail

Summary

• ID
  rs27079679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4562794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGAGGGT TGTGCTCCAG
  GGTTCTTTAT CGGGCCTGGA GGCACTCCTG AAAAAAATAC ACAAGTGGGG CTTTCTCCTG
  AGTGTTTGTG TCAGGTGTAA CTTCCTTGCC TCCCAGGGAG GGGTCTACTT TCTCTGATCT
  GTACATCAGA TACAGATGGG GTCCTTAACT CCCAACCCCT ACTCCATGCT ACCAAGACCA
  R
  GACCAGATAT ATCACTTGTA GGGCCCATGC CAAATAGATC AAAACACATT GGAAATTTCA
  AGATGGCAGC AGCAAGCGAA TGACCCTCTT GAGCAAGGGG CACTTGAGTC ACACATCCAT
  AAAGCCAGTC CTGTACAGGG TCCACGTTGC TTTGTTAGAG TTGGTACAGG GTAGGGTCTA
  AGAAGGACAT ATCTTTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37324700	NES08831901	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27079679					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37324700	NES08831901	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4562794 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11157	CpG island 11157	1557 bp proximal
Frmd4a	FERM domain containing 4A	within coordinates
Rr1275	regulatory region 1275	108 bp downstream
Rr367095	regulatory region 367095	1723 bp upstream
Rr551083	regulatory region 551083	1068 bp distal
Rr551084	regulatory region 551084	within coordinates
Rr551085	regulatory region 551085	1283 bp proximal
Tssr15962	transcription start site region 15962	1619 bp upstream
Tssr15963	transcription start site region 15963	1662 bp upstream
Tssr15964	transcription start site region 15964	1718 bp upstream
Tssr15965	transcription start site region 15965	1759 bp upstream
Tssr15966	transcription start site region 15966	1776 bp upstream
Tssr15967	transcription start site region 15967	1895 bp upstream
Tssr15968	transcription start site region 15968	1930 bp upstream
Tssr15969	transcription start site region 15969	1948 bp upstream
Tssr22384	transcription start site region 22384	1688 bp downstream