rs27081021 SNP Detail

Summary

• ID
  rs27081021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5682028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGTCCAC TCTGACCTTC
  ACGTGTGTGC CATGACCCAG ATAAATAAAT AAATCATTAA CGGAAATCTA GGAGCCTGCT
  GAAATGGCGC TCATAATTCA ACATGTGAAT TTTAAATGTT TTCCCCAAAA TGAATTAATG
  CCTATGGCTA GGCATGACGT CTTTAAGAGG TGAGAATTCC TTGGAGGTCC CGAGACTGCT
  Y
  TCTCCTGGTT CTGCCCACCT CCTCTGAGCA TCCTTCCCTC TCCACTTCCT GCCACTGCAG
  TGACATCTGC CTTGAGGTGA TGTGGCTAAG AGGACCCTTG CCAGCATGGT GCCACTTATA
  ATTTCAGCTT CTATAGCTAT GAACTAAATA AATCTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TTTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37320843	NES08827347	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27081021					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37320843	NES08827347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5682028 () rs orientation: forward

Symbol	Name	Function Class
Camk1d	calcium/calmodulin-dependent protein kinase ID	within coordinates
Rr56860	regulatory region 56860	827 bp distal
Rr64168	regulatory region 64168	1983 bp proximal
Rr372713	regulatory region 372713	228 bp downstream
Tssr22416	transcription start site region 22416	1192 bp upstream
Tssr22417	transcription start site region 22417	1152 bp upstream
Tssr22418	transcription start site region 22418	248 bp upstream
Tssr22419	transcription start site region 22419	224 bp upstream
Tssr22420	transcription start site region 22420	316 bp downstream