rs27081023 SNP Detail

Summary

• ID
  rs27081023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5681489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG GGTTCTTTTC TCCCTGCTTC
  Y
  AGCCAGGTTC ACTTGACACT GCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37320845	NES08827436	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T		T		T	C		T	C	C	C		T
ss45360152	mCV23173867	ABI	CRAMUS_MOUSE	f	SNP		C			C		T
ss146274579	ENSMUSSNP2641423	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss320209628	CHEV_2_5597724	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27081023					SNP	T	C	T	T	C	T	T	T	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37320845	NES08827436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5681489 () rs orientation: forward

Symbol	Name	Function Class
Camk1d	calcium/calmodulin-dependent protein kinase ID	within coordinates
Rr56860	regulatory region 56860	288 bp distal
Rr372713	regulatory region 372713	within coordinates
Tssr22416	transcription start site region 22416	653 bp upstream
Tssr22417	transcription start site region 22417	613 bp upstream
Tssr22418	transcription start site region 22418	277 bp downstream
Tssr22419	transcription start site region 22419	305 bp downstream
Tssr22420	transcription start site region 22420	855 bp downstream