rs27081024 SNP Detail

Summary

• ID
  rs27081024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5681281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCTCA GAAACAGCAC
  CAGACGTGGT GAATCACATC CATGCCCGCA TCTCATGACT TCCAAAACAG TACGGTGTTT
  TCTTAGCGTC ACAGACAAAC GTGGACACCG CCACACAGTT TATCTGGAAA TTATCAGCAC
  CTCTATCCTG AGGCAATCAC AGAGCTAGCT GTCTGTGGGG CCTCCCAACT AAGCATTTTT
  Y
  AGCAATTTAT TAATTTAAAA GGCATGCTAG ATGGGAGGGT TTTTGCTTTG GCTTTTAACC
  TTTCCAATCG CCAAAGAGGT AATTCTCCCT GTGCCTCTCA ACGGCCCCCA ACAGTGAGGA
  TAAACAGGCA CACTTTAAAA AATGTTTCCT AGTGAAGAAA GAGGCAGGCA CGCCAGCAGA
  GGCCAGGGGT TCTTTTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss37320846	NES08827433	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs27081024					SNP	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37320846	NES08827433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5681281 () rs orientation: forward

Symbol	Name	Function Class
Camk1d	calcium/calmodulin-dependent protein kinase ID	within coordinates
Rr56860	regulatory region 56860	80 bp distal
Rr372713	regulatory region 372713	within coordinates
Tssr22416	transcription start site region 22416	445 bp upstream
Tssr22417	transcription start site region 22417	405 bp upstream
Tssr22418	transcription start site region 22418	485 bp downstream
Tssr22419	transcription start site region 22419	513 bp downstream
Tssr22420	transcription start site region 22420	1063 bp downstream