rs27081030 SNP Detail

Summary

• ID
  rs27081030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:5680430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG AAAGGCAGCA AACTCTGGCC
  R
  CCCTGCCAGC GTGCCATGCC GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37320852	NES08827420	PERLEGEN	MM_PANEL2	f	SNP		A	G	A		G	A
ss146274574	ENSMUSSNP422042	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320209624	CHEV_2_5596665	CHEVERUD	SCREENING_POP	f	SNP					A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27081030					SNP	G	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37320852	NES08827420	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5680430 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk1d	calcium/calmodulin-dependent protein kinase ID			Intron
				Noncoding-Transcript-Variant
Rr372713	regulatory region 372713			within coordinates
Rr551243	regulatory region 551243			417 bp proximal
Rr551244	regulatory region 551244			1217 bp proximal
Tssr22416	transcription start site region 22416			372 bp downstream
Tssr22417	transcription start site region 22417			443 bp downstream
Tssr22418	transcription start site region 22418			1336 bp downstream
Tssr22419	transcription start site region 22419			1364 bp downstream
Tssr22420	transcription start site region 22420			1914 bp downstream