rs27081101 SNP Detail

Summary

• ID
  rs27081101
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:5662040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTATGTAG TCGAAGATCA
  AGAATGACCT TGAAGCCCTG GTCCTTCTGT GTCCATCTCC CAAATGCTGA GGTTTCTGCC
  ATGAACCACC ATGCCTAGCT CTTCTTGTTC TTAATGTCAT GCTGAAGACT GCGACAAGGC
  TTTAGGCACC CTAGCCAAGC ATCTGTGTGC ACATTAGCTC TGCACTTCAT CCCAGGTTGA
  M
  TTCTCCTACA TCACCAGCCC TTCATCCATG GTCCCACCTC CCACAATGCC TTAGGACACT
  TTTCTCTCCT TTGGTGCAAA CAATACTATC CGCCCCCCCC CCCTTTTAAA TCAGGACCAG
  ATCCCACCTC AGGGTACAGC CTAAGGGTCG AGTTTCCTTT CACAAGGCTA AAAAGGCAAA
  AAAAAAAAAA AAAAAAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37320927	NES08828102	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27081101					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37320927	NES08828102	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5662040 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk1d	calcium/calmodulin-dependent protein kinase ID			Intron
				Noncoding-Transcript-Variant
Rr551239	regulatory region 551239			804 bp proximal
Tssr22412	transcription start site region 22412			166 bp downstream