rs27081769 SNP Detail

Summary

• ID
  rs27081769
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3728056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCCCCTA AATTACAATT
  CTTTGTGCAC TTCCTGTTTC ACAGTTAATG GCTGAGATCT GTGACTCTAG CAACACTGTT
  GTTTTTCACT CCAGTCCGTT TCTGCTAGAA ACTACGCAGC CTGTGTACTG TCTGGAACAT
  GTTGCACGCA TGTGCTTTGA GAAGAACAGC ATGCATAGCT GACTAATTTC AAAAACAGCC
  W
  ATTTATAGTC CTTCAGAGTA ATTGTCAGAC ACTTGGTCTG TGCGCTTTTG CTCACGTCAT
  GTGGATCAAC ATGGCTTTTT AAATGGAGAT AAATTGTTTT TTATGTGTGG GTGATTCATT
  TGATACTTCT CTATAAATTC ATACCCCAAC TGTGTCTCTG AAGTGTGTCA CTGCAGTAAT
  AGCCCAGGGA GGAGTTTTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37327693	NES08844542	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27081769					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37327693	NES08844542	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3728056 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	633 bp upstream
Rr396754	regulatory region 396754	within coordinates
Tssr15911	transcription start site region 15911	155 bp upstream
Tssr22380	transcription start site region 22380	271 bp upstream
Tssr22381	transcription start site region 22381	211 bp upstream