rs27081776 SNP Detail

Summary

• ID
  rs27081776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3726856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTAAATC TTGGCTCTGA
  CCATAAGGTA TTGAAAAAAG ATGAAACCTG GAATGATAGA AGATTTTGAC ATTGTAAAGT
  GATGCTAACA AAAGCCACAG AAAGCAGGAG GCCATCTGAT TTAATCCATT TTTGAGGGGG
  TTGGGCAATG GTGGGCAATC TAATGCTTAG ATGTTTAGGG AGCCTTCCCG AGACTGCACA
  R
  CTAGTGGTGG TTGCTTGGAG TCTAAACTCA CAGTAGAAAA ACACCCTAAT ACCTAATGTT
  TATGTGAATA CTAAATGATA TAGGACTATA ACTAACGTGT CTTCACTAAA GCAGAAACAT
  TCCATAATCA CCAGCTCACA AATACTTGAT CATACTAACA ACAGTGGTCC TGCCTCTCTT
  CCTCTCTTAC TATTTTAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37327700	NES08844533	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A		A	A		A
ss320205079	CHEV_2_3643091	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27081776					SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37327700	NES08844533	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3726856 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	1833 bp upstream
Rr396754	regulatory region 396754	1004 bp upstream
Tssr15911	transcription start site region 15911	1355 bp upstream
Tssr22380	transcription start site region 22380	901 bp downstream
Tssr22381	transcription start site region 22381	968 bp downstream