rs27081777 SNP Detail

Summary

• ID
  rs27081777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3726771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCATCAC AACGGTTCTA
  AGAGTTGGGC ATTCCTCCCA CAGTGCCTTA AGTAAAGACC ATGCTTTTGA CTGTGCAGTT
  GGTGTCAAGT AAATCTTGGC TCTGACCATA AGGTATTGAA AAAAGATGAA ACCTGGAATG
  ATAGAAGATT TTGACATTGT AAAGTGATGC TAACAAAAGC CACAGAAAGC AGGAGGCCAT
  Y
  TGATTTAATC CATTTTTGAG GGGGTTGGGC AATGGTGGGC AATCTAATGC TTAGATGTTT
  AGGGAGCCTT CCCGAGACTG CACAACTAGT GGTGGTTGCT TGGAGTCTAA ACTCACAGTA
  GAAAAACACC CTAATACCTA ATGTTTATGT GAATACTAAA TGATATAGGA CTATAACTAA
  CGTGTCTTCA CTAAAGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37327701	NES08844532	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27081777					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37327701	NES08844532	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3726771 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	1918 bp upstream
Rr396754	regulatory region 396754	1089 bp upstream
Rr550941	regulatory region 550941	1457 bp distal
Rr550942	regulatory region 550942	569 bp proximal
Tssr15910	transcription start site region 15910	1936 bp downstream
Tssr15911	transcription start site region 15911	1440 bp upstream
Tssr22380	transcription start site region 22380	986 bp downstream
Tssr22381	transcription start site region 22381	1053 bp downstream