rs27084620 SNP Detail

Summary

• ID
  rs27084620
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11210984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACCCTGC TTCCTGTTTG
  ACTCCACTGA AATGCAAGTG TTTTGAAGAC AGCATTCCTA TTTCTACCAG TGTTTGCCCA
  TATTACATAC TCAAAGGGTA TCTGCAGTAT AAATGCTGCC ACTGAACAGA TTGTTTCTAG
  AATGTTTCTA GAATTGAGAA CGCAGTGTTG TCTCTCTGAT ATGTCAGCCT TCTGTCAGTG
  S
  ATAATCCTCC ATATCACAGA GAGCTCAGCT ACTGCTCCAG GAAGACCATG CCCTTCAAGT
  GCTGGGATGG AAATGGACCA GAGAGATTGA TCTCTTCTCC TTCTTTTGAT GGTGAAGAAG
  CTGGGCCTCA GAGGTGAAGT ACCTCAGTTT ATCCAGTTCC TCACTGGAAT GGAGTGGTCT
  CTTCATCTTC CATGAATGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37337843	NES08822103	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27084620					SNP	G	G	G	G	G	G	C	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37337843	NES08822103	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11210984 () rs orientation: forward

Symbol	Name	Function Class
Prkcq	protein kinase C, theta	within coordinates
Rr45715	regulatory region 45715	17 bp proximal
Rr45716	regulatory region 45716	417 bp proximal
Rr51202	regulatory region 51202	9 bp distal
Rr57623	regulatory region 57623	985 bp distal
Rr367104	regulatory region 367104	1559 bp downstream
Tssr16111	transcription start site region 16111	138 bp downstream
Tssr16112	transcription start site region 16112	61 bp downstream