rs27084659 SNP Detail

Summary

• ID
  rs27084659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11176172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTT GTGGGCTAGT TCAGTGCTTA
  Y
  GTATCAACAA ATGGCAAAGT GGATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ
ss37337882	NES08823071	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NZW/LacJ
rs27084659					SNP	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37337882	NES08823071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11176172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11198	CpG island 11198	651 bp proximal
Gm74583	predicted gene, 74583	within coordinates
Prkcq	protein kinase C, theta	750 bp upstream
Rr37311	regulatory region 37311	1172 bp distal
Rr55368	regulatory region 55368	428 bp proximal
Rr57618	regulatory region 57618	372 bp distal
Tssr402	transcription start site region 402	779 bp upstream
Tssr403	transcription start site region 403	1021 bp upstream
Tssr16098	transcription start site region 16098	520 bp upstream
Tssr16099	transcription start site region 16099	672 bp upstream
Tssr16100	transcription start site region 16100	693 bp upstream
Tssr16101	transcription start site region 16101	719 bp upstream
Tssr16102	transcription start site region 16102	800 bp upstream
Tssr16103	transcription start site region 16103	821 bp upstream
Tssr16104	transcription start site region 16104	855 bp upstream
Tssr16105	transcription start site region 16105	927 bp upstream
Tssr16106	transcription start site region 16106	948 bp upstream
Tssr16107	transcription start site region 16107	968 bp upstream
Tssr16108	transcription start site region 16108	995 bp upstream
Tssr16109	transcription start site region 16109	1027 bp upstream
Tssr22604	transcription start site region 22604	1274 bp upstream