rs27086778 SNP Detail

Summary

• ID
  rs27086778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94966695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT GTCTGAAATG TGGAGCGGTC
  R
  CGTCTAGACA GGTTCTGGCC AGGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37298213	NES08574812	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27086778					SNP	G	A	A	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298213	NES08574812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94966695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	within coordinates
Gm53645	predicted gene, 53645	315 bp upstream
Gm57362	predicted gene, 57362	559 bp upstream
Itga3	integrin alpha 3	within coordinates
Tssr3652	transcription start site region 3652	723 bp downstream
Tssr104346	transcription start site region 104346	1076 bp upstream
Tssr110254	transcription start site region 110254	697 bp downstream
Tssr110255	transcription start site region 110255	774 bp downstream
Tssr110256	transcription start site region 110256	788 bp downstream
Tssr110257	transcription start site region 110257	934 bp downstream