AAGAG CGATGTAATA GGTGTTTAAT R TACAGAGTTC TCCTAGCCCG GGAAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | BALB/cByJ |
BTBR T<+> Itpr3 |
FVB/NJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|
ss37298214 | NES08574811 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | G |
SNP Consensus Information | |||||||||||
SNP | Consensus Type | BALB/cByJ |
BTBR T<+> Itpr3 |
FVB/NJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs27086779 | SNP | A | A | A | A | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37298214 | NES08574811 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr11:94966586 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi3575 | CpG island 3575 | 79 bp proximal | ||||||
Gm53645 | predicted gene, 53645 | 424 bp upstream | ||||||
Gm57362 | predicted gene, 57362 | 668 bp upstream | ||||||
Itga3 | integrin alpha 3 | within coordinates | ||||||
Tssr3652 | transcription start site region 3652 | 832 bp downstream | ||||||
Tssr104346 | transcription start site region 104346 | 1185 bp upstream | ||||||
Tssr110254 | transcription start site region 110254 | 806 bp downstream | ||||||
Tssr110255 | transcription start site region 110255 | 883 bp downstream | ||||||
Tssr110256 | transcription start site region 110256 | 897 bp downstream | ||||||
Tssr110257 | transcription start site region 110257 | 1043 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/10/2024 MGI 6.24 |
![]() |
|