rs27086780 SNP Detail

Summary

• ID
  rs27086780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94966490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCACTGC TTCCGGGTGG
  GCTCTGGCCT CAGAGTAGAA GACAGCGCCT CCTCTGTCTT CTACTGTCCG TTCCTCTAGG
  GGCAAGAGGA AGTCTCTGGA CAGCTCCGAA TGCCCAGCCT CTTCATCACC TCACTCTGCA
  ATGCCAAGCC CTTGAGAAGT GTGGTCCAGC CTGGTTCTGC AGAGGGCGTG GCTGCTCTGG
  Y
  CACAGGCTAA ATGAGAGGGC TAATAGGGAT TTGAACGCAT ATATTCTCGG TTCTCTTCAA
  GGAGGAGGGG AAGAGCGATG TAATAGGTGT TTAATATACA GAGTTCTCCT AGCCCGGGAA
  AGAAGCTAAT GTTAGGTACT GGATTCTCAG GGTGCTGGGC AACAAAGACC CTACTTCCGA
  AGATGTCTGA AATGTGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ
ss37298215	NES08574810	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ
rs27086780					SNP	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298215	NES08574810	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94966490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	175 bp proximal
Gm53645	predicted gene, 53645	520 bp upstream
Gm57362	predicted gene, 57362	764 bp upstream
Itga3	integrin alpha 3	within coordinates
Rr454943	regulatory region 454943	727 bp distal
Rr454944	regulatory region 454944	8 bp distal
Rr454945	regulatory region 454945	274 bp proximal
Rr454946	regulatory region 454946	489 bp proximal
Rr454947	regulatory region 454947	755 bp proximal
Rr454948	regulatory region 454948	775 bp proximal
Rr454949	regulatory region 454949	1040 bp proximal
Rr454950	regulatory region 454950	1308 bp proximal
Rr454951	regulatory region 454951	1972 bp proximal
Tssr3652	transcription start site region 3652	928 bp downstream
Tssr104346	transcription start site region 104346	1281 bp upstream
Tssr110254	transcription start site region 110254	902 bp downstream
Tssr110255	transcription start site region 110255	979 bp downstream
Tssr110256	transcription start site region 110256	993 bp downstream
Tssr110257	transcription start site region 110257	1139 bp downstream