rs27086784 SNP Detail

Summary

• ID
  rs27086784
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94965427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG ATCCAGGTAT AAGCTCATCC
  S
  GGGGGGAAAC CGGCCCCGGA GAAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37298219	NES08574806	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	C	C	G	G	C	C	C	G	C	C	G
ss132653012	ENSMUSSNP2616416	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27086784					SNP	C	C	G	G	C	C	G	G	C	C	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37298219	NES08574806	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94965427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	1238 bp proximal
Gm53645	predicted gene, 53645	1583 bp upstream
Gm57362	predicted gene, 57362	1827 bp upstream
Itga3	integrin alpha 3	within coordinates
Tssr3652	transcription start site region 3652	1991 bp downstream
Tssr110254	transcription start site region 110254	1965 bp downstream