rs27087140 SNP Detail

Summary

• ID
  rs27087140
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95723724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAC TGTGGGGCAA GAAGAGAACC
  K
  TGTGAGGTGT CCCCTCGGTC ATGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss37296273	NES08563218	PERLEGEN	MM_PANEL2	f	SNP	T		G	G		T	T	G	T
ss38854141	mCV23213498	ABI	CRAMUS_MOUSE	f	SNP		T	G		T
ss132668272	ENSMUSSNP2949245	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs27087140					SNP	T	T	G	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37296273	NES08563218	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95723724 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	1333 bp distal
Cpgi3604	CpG island 3604	773 bp proximal
Phospho1	phosphatase, orphan 1	758 bp downstream
Rr369341	regulatory region 369341	290 bp upstream
Rr369342	regulatory region 369342	1345 bp upstream
Rr455203	regulatory region 455203	985 bp distal
Tssr104395	transcription start site region 104395	1561 bp downstream
Tssr104396	transcription start site region 104396	1525 bp downstream
Tssr104397	transcription start site region 104397	1360 bp downstream
Tssr110283	transcription start site region 110283	1075 bp upstream
Tssr110284	transcription start site region 110284	1218 bp downstream
Tssr110285	transcription start site region 110285	1237 bp downstream
Tssr110286	transcription start site region 110286	1270 bp downstream