rs27087141 SNP Detail

Summary

• ID
  rs27087141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95723525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA GTGCAGGGTT GGTGCAGGGA
  Y
  AGATCCTGGG CTGTCAGCAG CTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37296274	NES08563217	PERLEGEN	MM_PANEL2	f	SNP		C	C	T		T	T	T	C	C
ss38794799	mCV23213491	ABI	CRAMUS_MOUSE	f	SNP	T	C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27087141					SNP	T	C	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37296274	NES08563217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95723525 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	1134 bp distal
Cpgi3604	CpG island 3604	972 bp proximal
Phospho1	phosphatase, orphan 1	559 bp downstream
Rr369341	regulatory region 369341	489 bp upstream
Rr369342	regulatory region 369342	1544 bp upstream
Rr455202	regulatory region 455202	1997 bp distal
Rr455203	regulatory region 455203	786 bp distal
Tssr104394	transcription start site region 104394	1931 bp downstream
Tssr104395	transcription start site region 104395	1362 bp downstream
Tssr104396	transcription start site region 104396	1326 bp downstream
Tssr104397	transcription start site region 104397	1161 bp downstream
Tssr110283	transcription start site region 110283	876 bp upstream
Tssr110284	transcription start site region 110284	1417 bp downstream
Tssr110285	transcription start site region 110285	1436 bp downstream
Tssr110286	transcription start site region 110286	1469 bp downstream