rs27087142 SNP Detail

Summary

• ID
  rs27087142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95722719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGTACC AGATTCCTCG
  CGGCAGACCT ATGATGCTCT CAGAAGACAG CTCTAGGTCT TGATCTTGCT TCAGCCAACG
  CAACCCTACA CTACCGCTGC GCTGGCTGCG CCTTGCTTCC TTCCCCCTCT CCACCCCCAC
  CCCACCCCCG CCCACCAGAC ACCCCCCACC CACCCAAAGG AAGAAAAAGT CAGAAGGAAC
  Y
  ACCGCCTCCT GCTGGTAGAA CGAGGTAGAA GAACCGACCA CTGACCTCGG AGAGTGTGAA
  AAATCCTAGC ACTCCAGCAA GAGACCAGGG ACTTCACCAA AGTCGTCCCC TCCCCCCCCG
  CACCCCTCCC CCCTTGCATT CCCCTTTGCC CTTATGGAAC AGAAAGCCAT GTTTTTAAGC
  AGAGCCAGGG AAACCCAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss37296275	NES08563216	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs27087142					SNP	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37296275	NES08563216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95722719 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	328 bp distal
Cpgi3604	CpG island 3604	1778 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr369341	regulatory region 369341	1295 bp upstream
Rr455202	regulatory region 455202	1191 bp distal
Rr455203	regulatory region 455203	within coordinates
Tssr3654	transcription start site region 3654	1349 bp downstream
Tssr104394	transcription start site region 104394	1125 bp downstream
Tssr104395	transcription start site region 104395	556 bp downstream
Tssr104396	transcription start site region 104396	520 bp downstream
Tssr104397	transcription start site region 104397	355 bp downstream
Tssr110283	transcription start site region 110283	70 bp upstream