rs27087143 SNP Detail

Summary

• ID
  rs27087143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95722718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCAGTAC CAGATTCCTC
  GCGGCAGACC TATGATGCTC TCAGAAGACA GCTCTAGGTC TTGATCTTGC TTCAGCCAAC
  GCAACCCTAC ACTACCGCTG CGCTGGCTGC GCCTTGCTTC CTTCCCCCTC TCCACCCCCA
  CCCCACCCCC GCCCACCAGA CACCCCCCAC CCACCCAAAG GAAGAAAAAG TCAGAAGGAA
  Y
  TACCGCCTCC TGCTGGTAGA ACGAGGTAGA AGAACCGACC ACTGACCTCG GAGAGTGTGA
  AAAATCCTAG CACTCCAGCA AGAGACCAGG GACTTCACCA AAGTCGTCCC CTCCCCCCCC
  GCACCCCTCC CCCCTTGCAT TCCCCTTTGC CCTTATGGAA CAGAAAGCCA TGTTTTTAAG
  CAGAGCCAGG GAAACCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37296276	NES08563215	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27087143					SNP	C	T	T	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37296276	NES08563215	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95722718 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	327 bp distal
Cpgi3604	CpG island 3604	1779 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr369341	regulatory region 369341	1296 bp upstream
Rr455202	regulatory region 455202	1190 bp distal
Rr455203	regulatory region 455203	within coordinates
Tssr3654	transcription start site region 3654	1348 bp downstream
Tssr104394	transcription start site region 104394	1124 bp downstream
Tssr104395	transcription start site region 104395	555 bp downstream
Tssr104396	transcription start site region 104396	519 bp downstream
Tssr104397	transcription start site region 104397	354 bp downstream
Tssr110283	transcription start site region 110283	69 bp upstream