rs27087144 SNP Detail

Summary

• ID
  rs27087144
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95722561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACCCCTT GGAAGGCAGG
  CAGTGCCCCT CGAACTGAGA GGAACGGGTT CCTGGAAGTT GGGAGAAGGA ACATCTCCCA
  CTTACTTTAG CTGCTGTACC GGCTGCATAA CCTCCTCTGC CCAGTCTTTC AAACGGACTC
  AGGATCCCCC AATCCGCATG CCAGTACCAG ATTCCTCGCG GCAGACCTAT GATGCTCTCA
  R
  AAGACAGCTC TAGGTCTTGA TCTTGCTTCA GCCAACGCAA CCCTACACTA CCGCTGCGCT
  GGCTGCGCCT TGCTTCCTTC CCCCTCTCCA CCCCCACCCC ACCCCCGCCC ACCAGACACC
  CCCCACCCAC CCAAAGGAAG AAAAAGTCAG AAGGAACTAC CGCCTCCTGC TGGTAGAACG
  AGGTAGAAGA ACCGACCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37296277	NES08563214	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27087144					SNP	G	A	A	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37296277	NES08563214	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95722561 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	170 bp distal
Cpgi3604	CpG island 3604	1936 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr369341	regulatory region 369341	1453 bp upstream
Rr455202	regulatory region 455202	1033 bp distal
Rr455203	regulatory region 455203	157 bp proximal
Tssr3654	transcription start site region 3654	1191 bp downstream
Tssr104394	transcription start site region 104394	967 bp downstream
Tssr104395	transcription start site region 104395	398 bp downstream
Tssr104396	transcription start site region 104396	362 bp downstream
Tssr104397	transcription start site region 104397	197 bp downstream
Tssr110283	transcription start site region 110283	66 bp downstream