rs27087148 SNP Detail

Summary

• ID
  rs27087148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:95721478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC GACGACTCGA TCGTGCGTGC
  Y
  GCGCCAGGCC AGCAACTGCC CGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37296281	NES08563209	PERLEGEN	MM_PANEL2	f	SNP		T	T	C	C		C	C	C	C	T	C	T
ss38706322	mCV23213470	ABI	CRAMUS_MOUSE	f	SNP	C	T				C		C
ss132668236	ENSMUSSNP366109	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T						C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27087148					SNP	C	T	T	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37296281	NES08563209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95721478 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	mRNA-UTR
Cpgi3603	CpG island 3603	within coordinates
Phospho1	phosphatase, orphan 1	Coding-Synonymous
Rr455202	regulatory region 455202	29 bp proximal
Rr455203	regulatory region 455203	1240 bp proximal
Tssr3654	transcription start site region 3654	108 bp downstream
Tssr104394	transcription start site region 104394	101 bp upstream
Tssr104395	transcription start site region 104395	672 bp upstream
Tssr104396	transcription start site region 104396	709 bp upstream
Tssr104397	transcription start site region 104397	872 bp upstream
Tssr110283	transcription start site region 110283	1149 bp downstream