rs27087149 SNP Detail

Summary

• ID
  rs27087149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95721307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG TGGCCCGCTA ATCAGCTTCT
  Y
  CCTGGCCGGC TCCCGCCGCG CCGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37296282	NES08563208	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C		C	C	C	T	C	C	T
ss38830431	mCV23213469	ABI	CRAMUS_MOUSE	f	SNP		C	T			C	C
ss132668232	ENSMUSSNP1939594	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27087149					SNP	C	C	T	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37296282	NES08563208	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95721307 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	within coordinates
Phospho1	phosphatase, orphan 1	within coordinates
Rr455200	regulatory region 455200	1998 bp distal
Rr455202	regulatory region 455202	200 bp proximal
Rr455203	regulatory region 455203	1411 bp proximal
Tssr3654	transcription start site region 3654	41 bp upstream
Tssr104394	transcription start site region 104394	272 bp upstream
Tssr104395	transcription start site region 104395	843 bp upstream
Tssr104396	transcription start site region 104396	880 bp upstream
Tssr104397	transcription start site region 104397	1043 bp upstream
Tssr110283	transcription start site region 110283	1320 bp downstream