rs27087150 SNP Detail

Summary

• ID
  rs27087150
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95720745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAGGTA TGCCGTGGCC
  TGGTGAGGGG GGCTCCCACC TCCTTAAGCC CCATTGCTTC TCCTGTTGCC TGCTTGCTTC
  GGACTCTGGC AGAAACCCCA CCTGCTGGCA CGTGCTTCCC AGGGAATTGG CAAGTGATTA
  GCATGGGCAG CACATTAGCA CAGGGCCCAG CAGCTCCCAA AGAGACTCCC AGGGTCTTGT
  R
  TGGTTTGCAT ACCTACCTGG TAATTTCAAG GGCTAAAACC TAGCTCTCTG GCCAGGCCCA
  GGGAGGCTCA GGAACTTGGC TTTCCAGGCC TGGCACTTAT TGGCATCCAG GCCCAGGAAA
  GACCTGAGAC TCATTGCCCA CCCGGCCTTG GTGATGTCAA TGGCTTTTCC AGGAGCCTGG
  CTCCTCCATT TATTCTTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37296283	NES08563207	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27087150					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37296283	NES08563207	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95720745 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	155 bp downstream
Cpgi3603	CpG island 3603	292 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr455200	regulatory region 455200	1436 bp distal
Rr455202	regulatory region 455202	762 bp proximal
Rr455203	regulatory region 455203	1973 bp proximal
Tssr3654	transcription start site region 3654	603 bp upstream
Tssr104394	transcription start site region 104394	834 bp upstream
Tssr104395	transcription start site region 104395	1405 bp upstream
Tssr104396	transcription start site region 104396	1442 bp upstream
Tssr104397	transcription start site region 104397	1605 bp upstream
Tssr110283	transcription start site region 110283	1882 bp downstream