rs27087890 SNP Detail

Summary

• ID
  rs27087890
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99886813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACTGAAT GCTGAGTTTT
  AAGGAAAACA GAAGTGGAGA TGACATAGAG CATCTGCCAG GATGTGACAT CAGTGTGGAA
  TACCCCAATG TCGCCCCAAG AAGTCAAAGG CTTTGGGGAA GAGATGAGGA TGCGATGAGG
  ATGCTCAGGT TCTGAGATGG GTGAACGGTC TGTCTGTACT TTAAGCCTTG GGACCTTGCC
  K
  TGCTCCAGGG ATGATCATGG CAGCCCCAGA GCCAATGTGT CTCCACCTTA AGCCAAGGGA
  TTAGTGGGTA CAGATGGGAA TCTGGGCCAA ATAACACAGC CCCTCCCCTT TCCTTTGCCT
  TTCTTTTGGA GATGGGCTGG AAGCAAAGCC ACCTCTAAGA GAGGTTAGGC AGACTGGGGA
  CAAGGAAGAT CTGCGCAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37286115	NES08556721	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27087890					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286115	NES08556721	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99886813 () rs orientation: forward

Symbol	Name	Function Class
Gm73159	predicted gene, 73159	within coordinates
Krtap17-1	keratin associated protein 17-1	1993 bp upstream
Tssr110721	transcription start site region 110721	1990 bp upstream