rs27087891 SNP Detail

Summary

• ID
  rs27087891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99886796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATCAAAC TCCTATCTTA
  ACTGAATGCT GAGTTTTAAG GAAAACAGAA GTGGAGATGA CATAGAGCAT CTGCCAGGAT
  GTGACATCAG TGTGGAATAC CCCAATGTCG CCCCAAGAAG TCAAAGGCTT TGGGGAAGAG
  ATGAGGATGC GATGAGGATG CTCAGGTTCT GAGATGGGTG AACGGTCTGT CTGTACTTTA
  R
  GCCTTGGGAC CTTGCCTTGC TCCAGGGATG ATCATGGCAG CCCCAGAGCC AATGTGTCTC
  CACCTTAAGC CAAGGGATTA GTGGGTACAG ATGGGAATCT GGGCCAAATA ACACAGCCCC
  TCCCCTTTCC TTTGCCTTTC TTTTGGAGAT GGGCTGGAAG CAAAGCCACC TCTAAGAGAG
  GTTAGGCAGA CTGGGGACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286116	NES08556720	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A	A	A	A		A	A	A	A		A
ss38753764	mCV22958750	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A
ss323830227	CHEV_11_99857284	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087891					SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286116	NES08556720	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99886796 () rs orientation: forward

Symbol	Name	Function Class
Gm73159	predicted gene, 73159	within coordinates
Krtap17-1	keratin associated protein 17-1	1976 bp upstream
Tssr110721	transcription start site region 110721	1973 bp upstream