rs27087897 SNP Detail

Summary

• ID
  rs27087897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99885204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATTTGTC CAGAGGGTAA
  AAATACACCT GGGAAAAGAC CTGTCATTAG CCAGGTTGGA GAGAGGAAGG GAAGCTGGCC
  AAGGAATCTG CTCTGGCTCC TCTCCCACCT CTTCTCTAGT GGCGAAAAGG AGATCCCTCT
  GTTGGCCATG TAGCCTGTTT TCATGGATGC TGGCCCTTGA ACACTTGAAG AGTAAGAATG
  R
  ATAAGCCTTC TGCCTACACT TGAGGCTGCA GTAGAGGTTC TGACGCTGTG GGTCCTCCCT
  GGCAGAATAG CATTCTCTCC CCAGCCATGT GAGCAAAGCA AATATTTGTG TCTGTGTGAG
  GTATGTGGAT GTGAGCTGCA CGTTTATTTA GGCTTGGCAG GTGAGCATCA ATCACGAGTA
  ATAACTGACT TGTGAAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286122	NES08556749	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A	A		A	A	A		G	A	A	A		G
ss38766288	mCV22958761	ABI	CRAMUS_MOUSE	f	SNP		A	G					A	A
ss132716457	ENSMUSSNP2629351	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss323830225	CHEV_11_99855692	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087897					SNP	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286122	NES08556749	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99885204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	439 bp distal
Gm73159	predicted gene, 73159	1345 bp downstream
Krtap17-1	keratin associated protein 17-1	384 bp upstream
Tssr110721	transcription start site region 110721	381 bp upstream