rs27087898 SNP Detail

Summary

• ID
  rs27087898
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99885079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTACAGGA TGTTTGCTTT
  GTTATTATTT GTGCTGGTTT CCATAAGAAC GTCTCATTAG TTGGCTGTTT ATTTTCCAGC
  CGTGAGTACC TCAACTCATA AAAAAAGGCC CCACTCGTCC CAACTGCTAT TTGTCCAGAG
  GGTAAAAATA CACCTGGGAA AAGACCTGTC ATTAGCCAGG TTGGAGAGAG GAAGGGAAGC
  W
  GGCCAAGGAA TCTGCTCTGG CTCCTCTCCC ACCTCTTCTC TAGTGGCGAA AAGGAGATCC
  CTCTGTTGGC CATGTAGCCT GTTTTCATGG ATGCTGGCCC TTGAACACTT GAAGAGTAAG
  AATGAATAAG CCTTCTGCCT ACACTTGAGG CTGCAGTAGA GGTTCTGACG CTGTGGGTCC
  TCCCTGGCAG AATAGCATTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286123	NES08556748	PERLEGEN	MM_PANEL2	f	SNP	T		T	T		T	T	T		A	T	T	A		A
ss38704116	mCV22958762	ABI	CRAMUS_MOUSE	f	SNP		A			T	T
ss132716453	ENSMUSSNP3258170	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				T
ss323830224	CHEV_11_99855567	CHEVERUD	SCREENING_POP	f	SNP									T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087898					SNP	T	A	T	T	T	T	T	T	T	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286123	NES08556748	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99885079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	314 bp distal
Gm73159	predicted gene, 73159	1470 bp downstream
Krtap17-1	keratin associated protein 17-1	259 bp upstream
Tssr110721	transcription start site region 110721	256 bp upstream