rs27087900 SNP Detail

Summary

• ID
  rs27087900
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99884995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTGTTATT ATTTGTGCTG GTTTCCATAA GAACGTCTCA
  TTAGTTGGCT GTTTATTTTC CAGCCGTGAG TACCTCAACT CATAAAAAAA GGCCCCACTC
  K
  TCCCAACTGC TATTTGTCCA GAGGGTAAAA ATACACCTGG GAAAAGACCT GTCATTAGCC
  AGGTTGGAGA GAGGAAGGGA AGCTGGCCAA GGAATCTGCT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37286125	NES08556746	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27087900					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286125	NES08556746	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99884995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	230 bp distal
Gm73159	predicted gene, 73159	1554 bp downstream
Krtap17-1	keratin associated protein 17-1	175 bp upstream
Tssr110721	transcription start site region 110721	172 bp upstream