rs27087902 SNP Detail

Summary

• ID
  rs27087902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCACAGT ACAGAAAGTA
  GGCATTCACC CTGAGCATGA TGAGACACAC CTAGAGTCAG CCTACCTTGA AGCTTTCAGA
  AATATGACCC TCAGGCACCC CAGGTCCTAG AACTGATGGA TACCACAGCC AGTGGTGGCA
  CCCAGGTATT GTCAAAGCCT CCCTAAGCGA CTCTCACACT GCACTCAGCA GCTTCTGTCT
  R
  CAGTCTGTCT ACAATCTGTA CAACCTCCAA CCCTCCATGT AGAGAATTAC CTAAGTTCGT
  ATTAAAAACA CAGACACACA CCCCCCCAGG CCACGTCCCT ACAGCACCCT TTATGTTTCA
  GTGGGGGCTG GAACCTTCCG GGACTCTGCT GCAGGAGATC AGCAAATACT ATGCTGTCCC
  TAGTTGGATG CTAAAGTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37286127	NES08556773	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27087902					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286127	NES08556773	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	559 bp proximal
Krtap17-1	keratin associated protein 17-1	252 bp downstream
Tssr110721	transcription start site region 110721	1010 bp downstream