rs27087903 SNP Detail

Summary

• ID
  rs27087903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGCCAC AGGGTTCAGG
  CCAAGCATCC TAGAAGCACA GTACAGAAAG TAGGCATTCA CCCTGAGCAT GATGAGACAC
  ACCTAGAGTC AGCCTACCTT GAAGCTTTCA GAAATATGAC CCTCAGGCAC CCCAGGTCCT
  AGAACTGATG GATACCACAG CCAGTGGTGG CACCCAGGTA TTGTCAAAGC CTCCCTAAGC
  R
  ACTCTCACAC TGCACTCAGC AGCTTCTGTC TACAGTCTGT CTACAATCTG TACAACCTCC
  AACCCTCCAT GTAGAGAATT ACCTAAGTTC GTATTAAAAA CACAGACACA CACCCCCCCA
  GGCCACGTCC CTACAGCACC CTTTATGTTT CAGTGGGGGC TGGAACCTTC CGGGACTCTG
  CTGCAGGAGA TCAGCAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286128	NES08556771	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G	G	G	G	G	G		A	G	G	G		G
ss132716449	ENSMUSSNP55401	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss323830223	CHEV_11_99854264	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087903					SNP	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286128	NES08556771	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	591 bp proximal
Krtap17-1	keratin associated protein 17-1	284 bp downstream
Tssr110721	transcription start site region 110721	1042 bp downstream