rs27087907 SNP Detail

Summary

• ID
  rs27087907
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGCTAG CCTTGATCTG
  TACACGTGCC CCTTTTCTTC CTCTGAGTAC AGTAACTGCG GCTAGGTCCA ATACAAAACC
  AAACAAAAAC AAAACAAAGA CAACAAATAA AAAACAACAC TAGCCAAAAT AGCAAGACCA
  GAACACGAGG CTAGAGGGGA ATTGTACCAA CACAAACATC CTCAGAAACT GAGCATTCAC
  S
  GTCTGGCCGC AGAAATCCCC GCCATTCACA ACCAACCTGG GATGGGTTTA TGATGCCAGC
  TACATGGAAG GCTGAGGCAG GAGGATTCTA AATTTAAGGC CAGCTGGGGC AACTGACTGA
  GACCCTATCT CACAATAAAA AGTAAACGGA GACCTGAGAA TTCAGCCTCG TGGTAGGGAG
  TCTGCCTAGC ATGCCTTTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286132	NES08556784	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G		C	G	G	G		G
ss132716405	ENSMUSSNP2246852	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					G
ss323830212	CHEV_11_99853803	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087907					SNP	G	C	G	G	G	G	G	G	G	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286132	NES08556784	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1052 bp proximal
Krtap17-1	keratin associated protein 17-1	745 bp downstream
Tssr110721	transcription start site region 110721	1503 bp downstream