rs27087908 SNP Detail

Summary

• ID
  rs27087908
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTAATC CACTCTTATA
  TGAGTCTTCA TTTCCCAGCT AGCCTTGATC TGTACACGTG CCCCTTTTCT TCCTCTGAGT
  ACAGTAACTG CGGCTAGGTC CAATACAAAA CCAAACAAAA ACAAAACAAA GACAACAAAT
  AAAAAACAAC ACTAGCCAAA ATAGCAAGAC CAGAACACGA GGCTAGAGGG GAATTGTACC
  M
  ACACAAACAT CCTCAGAAAC TGAGCATTCA CGGTCTGGCC GCAGAAATCC CCGCCATTCA
  CAACCAACCT GGGATGGGTT TATGATGCCA GCTACATGGA AGGCTGAGGC AGGAGGATTC
  TAAATTTAAG GCCAGCTGGG GCAACTGACT GAGACCCTAT CTCACAATAA AAAGTAAACG
  GAGACCTGAG AATTCAGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286133	NES08556783	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A		C	A	A	A		A
ss132716401	ENSMUSSNP1933858	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					A
ss323830211	CHEV_11_99853771	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087908					SNP	A	C	A	A	A	A	A	A	A	A	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286133	NES08556783	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1084 bp proximal
Krtap17-1	keratin associated protein 17-1	777 bp downstream
Tssr110721	transcription start site region 110721	1535 bp downstream