rs27087909 SNP Detail

Summary

• ID
  rs27087909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCCCAGC ATTAAGGAGG
  CAGAGGGAGG CAGGTGAGTT AAAGGCCTAT ATAACCTATA TAGGGAGTTC CAGGCTAACT
  GGGGCTATGT AGTGGGACCC GGTCATTGCT CTGTAAAAGT AAAAATAGAT ACTGTTCCCT
  TAGTGCAAGA ACAGATTTTA TTAATTTTAA CCCATGTGTC ACTTAAAATC ATTCCTAACT
  R
  GGGATTAATC CACTCTTATA TGAGTCTTCA TTTCCCAGCT AGCCTTGATC TGTACACGTG
  CCCCTTTTCT TCCTCTGAGT ACAGTAACTG CGGCTAGGTC CAATACAAAA CCAAACAAAA
  ACAAAACAAA GACAACAAAT AAAAAACAAC ACTAGCCAAA ATAGCAAGAC CAGAACACGA
  GGCTAGAGGG GAATTGTACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37286134	NES08556808	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A		A		G	A	A		A
ss132716377	ENSMUSSNP4955787	ENSEMBL	ENSEMBL_Sanger	f	SNP	G					A
ss323830207	CHEV_11_99853570	CHEVERUD	SCREENING_POP	f	SNP								A				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27087909					SNP	G	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286134	NES08556808	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1285 bp proximal
Krtap17-1	keratin associated protein 17-1	978 bp downstream
Tssr110721	transcription start site region 110721	1736 bp downstream