rs27087910 SNP Detail

Summary

• ID
  rs27087910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGAATC GTTGTGCATG
  CTTTTAACCC CAGCATTAAG GAGGCAGAGG GAGGCAGGTG AGTTAAAGGC CTATATAACC
  TATATAGGGA GTTCCAGGCT AACTGGGGCT ATGTAGTGGG ACCCGGTCAT TGCTCTGTAA
  AAGTAAAAAT AGATACTGTT CCCTTAGTGC AAGAACAGAT TTTATTAATT TTAACCCATG
  Y
  GTCACTTAAA ATCATTCCTA ACTAGGGATT AATCCACTCT TATATGAGTC TTCATTTCCC
  AGCTAGCCTT GATCTGTACA CGTGCCCCTT TTCTTCCTCT GAGTACAGTA ACTGCGGCTA
  GGTCCAATAC AAAACCAAAC AAAAACAAAA CAAAGACAAC AAATAAAAAA CAACACTAGC
  CAAAATAGCA AGACCAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37286135	NES08556804	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27087910					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286135	NES08556804	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1309 bp proximal
Krtap17-1	keratin associated protein 17-1	1002 bp downstream
Tssr110721	transcription start site region 110721	1760 bp downstream