rs27087958 SNP Detail

Summary

• ID
  rs27087958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99871323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCTCTG GACCTGTCTC
  TTTTTCCTCT GGGCTCAAGT GGGCGGCTGC ACCACCGACT GATTCCAGCA TCCCACGCAA
  GTGCATGTCC TGGCCTGGTT CCTGCTAAGA CTTGCGATGG AATGGAAGGA TGCTGGTGTG
  GATCGGCAGG CAGGGCTGCC TGGATTTGCA GCTCATTCGG TGGAACAGGA TGGCTCATTA
  Y
  CTACATCTTC AAAGTACCAG GACATCCTAA GGTGCCTTGA TGTTTCTTGG GTTAACTCAG
  CTGCTTCCGA AACAGATGAA ATAGCTGGAG ATTCTGGAAG GGACTAGGCA AGGGAGCAGC
  TGTGGAGTCT TGTCTCTTTG GCTCTCTCTT CTACCCCTGT TCTGAAAGAA GACAAACTCC
  TGGGGAGAGC CACGCCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286185	NES08557030	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		T	C	C	C		C	C	C	C		C
ss38702747	mCV22958959	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		C
ss132715984	ENSMUSSNP7006266	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
ss323830101	CHEV_11_99841811	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087958					SNP	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286185	NES08557030	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99871323 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	1444 bp upstream
Tssr110719	transcription start site region 110719	1394 bp upstream