rs27087966 SNP Detail

Summary

• ID
  rs27087966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99870383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCCTCC TCCAAGAGGA
  AGCCGCTCTT CCTCCAGGAC GCAGTTCTGT GCCATCAGAT GCGGTGGAGT GCTGACAGTA
  TTCAAAGAGA AGGTGTGATA TCAAAAATGA AGAACAGAAA ACTAGTCTGT GGACCGCAAG
  AATGTTTATG CGTGTCCCCC TCTCCCTAGA ATCTTCACAT CAGCATTTTG AACTTAACTC
  Y
  GGAGTTGCTG CCAACAATTA ACAGCTGTAA TGACCTCCCT TAGCACAGCT ACCATCCTTG
  AAATGACCTT AGCTAGGAAG TATGGCTGAC ATCCCTATTT TAAAAGTAAC AAGACAAACT
  CAAAGTTTAA ATTATGATAA AAAACAAAAT TCGAATCCAG AGCCATCGGT CCCAAAATCT
  CTGCTCATTT GGATCTCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286193	NES08557109	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	C	C		C	C	C	C		C
ss38738845	mCV22958971	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss132715976	ENSMUSSNP3248170	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
ss323830099	CHEV_11_99840871	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087966					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286193	NES08557109	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99870383 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	504 bp upstream
Tssr110719	transcription start site region 110719	454 bp upstream