rs27087967 SNP Detail

Summary

• ID
  rs27087967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99870252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCCTGG ACGAGGCCGC
  CACTGGGAGT TTTCTTTGCC GAATTTGGAT GCACTCTGGG ATGAGCTGTC TCTTTTACAG
  GTTGTTCCTC AGCCTCACCA AAGCAAGCTT TTCCTCAGTA CCCTCTCATC AGGAGGCCTC
  CTCCAAGAGG AAGCCGCTCT TCCTCCAGGA CGCAGTTCTG TGCCATCAGA TGCGGTGGAG
  Y
  GCTGACAGTA TTCAAAGAGA AGGTGTGATA TCAAAAATGA AGAACAGAAA ACTAGTCTGT
  GGACCGCAAG AATGTTTATG CGTGTCCCCC TCTCCCTAGA ATCTTCACAT CAGCATTTTG
  AACTTAACTC CGGAGTTGCT GCCAACAATT AACAGCTGTA ATGACCTCCC TTAGCACAGC
  TACCATCCTT GAAATGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37286194	NES08557108	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	T		T	T	T	T	C	T	T	C	T
ss38680518	mCV22959501	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss132715969	ENSMUSSNP3254948	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27087967					SNP	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286194	NES08557108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99870252 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	373 bp upstream
Tssr110719	transcription start site region 110719	323 bp upstream