rs27087968 SNP Detail

Summary

• ID
  rs27087968
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99870217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATTTAC ATATAAACAT
  CAGGTGAGGG CTTTAGGAGC CCTGGACGAG GCCGCCACTG GGAGTTTTCT TTGCCGAATT
  TGGATGCACT CTGGGATGAG CTGTCTCTTT TACAGGTTGT TCCTCAGCCT CACCAAAGCA
  AGCTTTTCCT CAGTACCCTC TCATCAGGAG GCCTCCTCCA AGAGGAAGCC GCTCTTCCTC
  M
  AGGACGCAGT TCTGTGCCAT CAGATGCGGT GGAGTGCTGA CAGTATTCAA AGAGAAGGTG
  TGATATCAAA AATGAAGAAC AGAAAACTAG TCTGTGGACC GCAAGAATGT TTATGCGTGT
  CCCCCTCTCC CTAGAATCTT CACATCAGCA TTTTGAACTT AACTCCGGAG TTGCTGCCAA
  CAATTAACAG CTGTAATGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37286195	NES08557107	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27087968					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286195	NES08557107	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99870217 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	338 bp upstream
Tssr110719	transcription start site region 110719	288 bp upstream