rs27087972 SNP Detail

Summary

• ID
  rs27087972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99869882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACAGGT TCAGAGCTAA
  CTGGGACACT GTCGGGTCCT TGACGGTTTT CTTGATGTGT AACCAGTTGC CATGTCCTAC
  ACCGGCAGGA ACTGGGTAAA CGGATAGCAT TTCTAATGCT GCCACCATTG GAGCATGTAG
  AGATGGTGGG CACAGTTGGA ACAGCTGTGG GGTTTTCAGG GCAACAGCTG TCTGCCATGG
  Y
  GTTCCTACTA GCCAGGCTGG GAGTCTGCAA GAACCATCCG TTTGAAAAAG GCATCTGATT
  CCAAGGGGAT TTTATAGTCC TTCCCTGGGG TGTTGTTGGC CCTGCCTACA GCATCTTTCC
  TTGTTGGTAT TCTTATTCAT TTACATATAA ACATCAGGTG AGGGCTTTAG GAGCCCTGGA
  CGAGGCCGCC ACTGGGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37286199	NES08557103	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27087972					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286199	NES08557103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99869882 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	3 bp upstream
Tssr110719	transcription start site region 110719	41 bp downstream