rs27087979 SNP Detail

Summary

• ID
  rs27087979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99869494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGTGGG TTGATGTGAC
  CCGCCTTGGC AGCTGGTTGG TTGGCACGAG CCAGCCTCAC AGCCAGCTGG TAGACACGGG
  GTCTCAGCAT AGGATGTTGC TTCAGAGCAG GATGGCTGGC AGGATCTGTC ATCACAGGAC
  GCTGATGGGC CACATGCTGT CTGGCATGAC CCAGATGTGC AGGCAGATCC CTGGCCGGAG
  Y
  TCTGGTGGCA GGAGCTGTTC TCGTAGCACA TCGTGTGACA ACCAGCAGAT TCCAGACAGG
  AGGGCTGGCA TGAAGCAGCA GGATGAGGAC TCCCACCAGT GTCAGATGCA CAGCAGGCCA
  TGTGTGAACC TATGGGTTGG CAAATAAAAC CCACACAGGG AGTTTCTGGG AAGCAGGTGG
  ATGGACAAGA AACAGGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286206	NES08557095	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C	C	C		T	C	C	T		C
ss132715949	ENSMUSSNP6621734	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss323830093	CHEV_11_99839982	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087979					SNP	C	T	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286206	NES08557095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99869494 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	within coordinates
Tssr110719	transcription start site region 110719	429 bp downstream