rs27087982 SNP Detail

Summary

• ID
  rs27087982
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99869316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGCGTTG TTTGACAGTG
  AAGTGGCTGG CAAGTGGGGG GCACACAGCA AGTTTGACTG CAAAAGCACA TACAAGTTAA
  TGGCTGGCAG GAGACAGACA TGCAGGGAGT TGACTGGCAG GACTTAAGAA CATAGCAGAT
  AGGTTGGTAA TAAACTGACT GACAGAGCTG ACCTTCACCT CTGGTGGGTT GATGTGACCC
  K
  CCTTGGCAGC TGGTTGGTTG GCACGAGCCA GCCTCACAGC CAGCTGGTAG ACACGGGGTC
  TCAGCATAGG ATGTTGCTTC AGAGCAGGAT GGCTGGCAGG ATCTGTCATC ACAGGACGCT
  GATGGGCCAC ATGCTGTCTG GCATGACCCA GATGTGCAGG CAGATCCCTG GCCGGAGCTC
  TGGTGGCAGG AGCTGTTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286209	NES08557092	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	G	G	G	G	G	G	G		T	G	G	T		G
ss132715941	ENSMUSSNP365099	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						G
ss323830091	CHEV_11_99839804	CHEVERUD	SCREENING_POP	f	SNP												G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087982					SNP	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286209	NES08557092	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99869316 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	within coordinates
Tssr110719	transcription start site region 110719	607 bp downstream