rs27087988 SNP Detail

Summary

• ID
  rs27087988
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99868293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCACTGG GGTTAAAGGC
  ATGCTGCTCT GCACTCAGTC CATAGGTTTA TAATCATCTA TAGCTCTCCT GAATTATCTC
  TGTTTCGGGT TTTTCAAATC CACTCATCAT GAGGAAACTA AGGCCACTCA GTTCCAAAGA
  GCTCTTGGTG ATAAGAAGGT TAAAAATAAG CAAGCTACTT GTCCTTTCTC ACGGCTTGAG
  M
  ATCTATAGTT TCAGATACCT GCTACCCATG TAGATTAATG CAGATTTTCC AACCAGGGGG
  CTCCGGGTCA GTGTGTTTAA ATGTGACCTA AATGAAAGCA GTCTGTAAGT CTTACTTGGT
  AAACTTAACC ACTCAAATTT TTATTAGCCG CTGGCAGCAA AAGCATCTCC AGAAAAGAAA
  GACCAGGCCA AAAAAAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37286215	NES08557085	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27087988					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286215	NES08557085	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99868293 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	558 bp downstream
Tssr110719	transcription start site region 110719	1630 bp downstream