rs27087989 SNP Detail

Summary

• ID
  rs27087989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99868178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGCTTG TTACCAACTC
  TGATGCATCC CTGACCTTCT CTTCTCAGCT ATTGTTGCAG TGGGATCTCC TTACATACCC
  CGAGCAGCCT GGAGCTCATG GTCCTCTCAG TCTCCGGGGC ACTGGGGTTA AAGGCATGCT
  GCTCTGCACT CAGTCCATAG GTTTATAATC ATCTATAGCT CTCCTGAATT ATCTCTGTTT
  Y
  GGGTTTTTCA AATCCACTCA TCATGAGGAA ACTAAGGCCA CTCAGTTCCA AAGAGCTCTT
  GGTGATAAGA AGGTTAAAAA TAAGCAAGCT ACTTGTCCTT TCTCACGGCT TGAGCATCTA
  TAGTTTCAGA TACCTGCTAC CCATGTAGAT TAATGCAGAT TTTCCAACCA GGGGGCTCCG
  GGTCAGTGTG TTTAAATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286216	NES08557082	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C		C	C	C	C		C	C	C	C		C
ss38853634	mCV22959525	ABI	CRAMUS_MOUSE	f	SNP	C	T					C		C
ss132715909	ENSMUSSNP287745	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss323830082	CHEV_11_99838666	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087989					SNP	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286216	NES08557082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99868178 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	673 bp downstream
Tssr110719	transcription start site region 110719	1745 bp downstream