rs27087990 SNP Detail

Summary

• ID
  rs27087990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99868144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGAATC TAATCCTGGC
  CTTCCTGCAT TCCAGACAAG CTTGTTACCA ACTCTGATGC ATCCCTGACC TTCTCTTCTC
  AGCTATTGTT GCAGTGGGAT CTCCTTACAT ACCCCGAGCA GCCTGGAGCT CATGGTCCTC
  TCAGTCTCCG GGGCACTGGG GTTAAAGGCA TGCTGCTCTG CACTCAGTCC ATAGGTTTAT
  R
  ATCATCTATA GCTCTCCTGA ATTATCTCTG TTTCGGGTTT TTCAAATCCA CTCATCATGA
  GGAAACTAAG GCCACTCAGT TCCAAAGAGC TCTTGGTGAT AAGAAGGTTA AAAATAAGCA
  AGCTACTTGT CCTTTCTCAC GGCTTGAGCA TCTATAGTTT CAGATACCTG CTACCCATGT
  AGATTAATGC AGATTTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37286217	NES08557079	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A		A		A	A	A	A		A
ss38806938	mCV22959526	ABI	CRAMUS_MOUSE	f	SNP	A	G					A	A
ss132715905	ENSMUSSNP4867409	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss323830081	CHEV_11_99838632	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27087990					SNP	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37286217	NES08557079	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99868144 () rs orientation: forward

Symbol	Name	Function Class
Krtap29-1	keratin associated protein 29-1	707 bp downstream
Tssr110719	transcription start site region 110719	1779 bp downstream