rs27088516 SNP Detail

Summary

• ID
  rs27088516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99308881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCCATCTC CAGGCGAGCC TTGACGCCCA GCAGCCGCTG
  GTGGTCCGCA TTCTGGCGCT CCGCGTCAGC CCGCACCTGT TGGAGTTGCT CCTCCAGGCT
  R
  CCGATCAGCT GCTGCACCTG AGACAGTTGG CAGCAGTACC CACCCTCGGT TTCAGCCAGC
  GAGCCTTCCA GGGACGACTT CTGCAAATGG GAGATAGACA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37288142	NES08563945	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27088516					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288142	NES08563945	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99308881 () rs orientation: forward

Symbol	Name	Function Class
A830036E02Rik	RIKEN cDNA A830036E02 gene	within coordinates
Cpgi3798	CpG island 3798	within coordinates
Krt12	keratin 12	within coordinates
Tssr104877	transcription start site region 104877	903 bp downstream
Tssr104878	transcription start site region 104878	787 bp downstream
Tssr104879	transcription start site region 104879	748 bp downstream
Tssr110665	transcription start site region 110665	1068 bp upstream
Tssr110666	transcription start site region 110666	335 bp downstream
Tssr110667	transcription start site region 110667	373 bp downstream