rs27088520 SNP Detail

Summary

• ID
  rs27088520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99308407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAGTGAG ATAGTGGCTG
  AATACATTCT ATTATCTAGT AAATTCTAGG CATGCATTTT CTAGATTTGT TGTTTTATCC
  TTTTTTCCCT CCTCTTCAAA AGTCTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGCATGCA
  TGTTCATGTG TTGGTTCTGG ACTACACCTT GTTTGAGACA CACTGGGCCA CAGACTTCTG
  R
  GGCTCTTCAT GCCTCCACCT TCTGTCTTCA GCAGGAGCGA TGAGGTTAGA GATACACTCG
  ACATGGGTTT TGGGGGCTCT GGACTCAGTT CTCTACACTT GCAAGCTTCC CAGCCCACCC
  CCTCTTCCTG CAGGCAGTAT GCAGATGTAG CTCAGGTTGG TCTGGAACGT GGGTTCCTCT
  TGCCCCAGAC TCCTCAGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37288146	NES08563978	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27088520					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288146	NES08563978	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99308407 () rs orientation: forward

Symbol	Name	Function Class
A830036E02Rik	RIKEN cDNA A830036E02 gene	within coordinates
Cpgi3798	CpG island 3798	336 bp proximal
Krt12	keratin 12	within coordinates
Tssr104877	transcription start site region 104877	429 bp downstream
Tssr104878	transcription start site region 104878	313 bp downstream
Tssr104879	transcription start site region 104879	274 bp downstream
Tssr110665	transcription start site region 110665	594 bp upstream
Tssr110666	transcription start site region 110666	809 bp downstream
Tssr110667	transcription start site region 110667	847 bp downstream