rs27088529 SNP Detail

Summary

• ID
  rs27088529
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99307595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATGGCGCT CATTTTGTCT TCCTAGAGTA GGATTTTCTT
  ACTTGAGCTT GCTGAGAGTT TTAATATACC ACTCCACTGC CCAGTGTGTT TGAGCAGAGA
  K
  ATGTCCCCTG CTCAGAACAC AAATCTATTT TAAGTTATTT ACACTCAACG TTTAGTGAGA
  TCTTACAGTT TAGTCATTTC ACGAATGAGA GTCTGCCTTA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37288155	NES08563969	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27088529					SNP	T	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288155	NES08563969	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99307595 () rs orientation: forward

Symbol	Name	Function Class
A830036E02Rik	RIKEN cDNA A830036E02 gene	474 bp upstream
Cpgi3798	CpG island 3798	1148 bp proximal
Krt12	keratin 12	within coordinates
Tssr104877	transcription start site region 104877	372 bp upstream
Tssr104878	transcription start site region 104878	453 bp upstream
Tssr104879	transcription start site region 104879	506 bp upstream
Tssr110665	transcription start site region 110665	200 bp downstream
Tssr110666	transcription start site region 110666	1621 bp downstream
Tssr110667	transcription start site region 110667	1659 bp downstream