rs27088533 SNP Detail

Summary

• ID
  rs27088533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99307150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACAAAC AAACAAACAA
  CACAAAAGAG GATGATGATT ATTACTAAGC AGTTATCAAC CCAAGGTTTA TTCTTGTTCA
  ACTTAAGCTT TTCGTCAAAT TCAGACTTTT GCAAGTGACT CCATTCCAAA CCAAGTGAGT
  TTTACTTAGT GGAAATGAAA TTTATTCAGG ACTGTCTTGT GCACAAATCA AAAGGCTCAA
  Y
  GTCTCCCTCC ATCTCTCTGT TCCTCTAGTT CTTTCTTTCA GTTCAGGGTC TTGCTAAATA
  TTAGCCCAGG ATAGCCTGGA ACTCACTATC CCCCCCCCCC TCTCTCTTTC TCTCTCTCTC
  TCTTTTAATT TTTATTAAAA AAATTTAGCC CTCCAAGAGA TGGGATGGCA GGCACACACT
  AATCCTGGTG TACTTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37288159	NES08564053	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27088533					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288159	NES08564053	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99307150 () rs orientation: forward

Symbol	Name	Function Class
A830036E02Rik	RIKEN cDNA A830036E02 gene	919 bp upstream
Cpgi3798	CpG island 3798	1593 bp proximal
Krt12	keratin 12	within coordinates
Tssr104877	transcription start site region 104877	817 bp upstream
Tssr104878	transcription start site region 104878	898 bp upstream
Tssr104879	transcription start site region 104879	951 bp upstream
Tssr110665	transcription start site region 110665	645 bp downstream